Identification

Data Identification:

citation:

Citation:

Title:

Tomographic data on the developmental biology of the Early Cambrian cnidarian Olivooides (NERC grant NE/J018325/1)

Date:

CI_Date:

Date Type:

publication

date:

2016-02-16

Identifier:

RS_Identifier:

code:

http://data.bgs.ac.uk/id/dataHolding/13607249

Abstract:

The folders GMPKU2311, GMPKU3089, ELISN108-343 and ELISN31-5 contain data from X-ray tomographic analyses of fossil embryos and post-embryonic stages as described: There is one data folder provided for each specimen, each containing the following: - Raw data: zip archive containing the raw scan data (.tif image stack). - Working files: zip archive containing the segmented slices (.tif image stack exported from Avizo labels). - Avizo project: the Avizo .hx project file. - Avizo labels: the Avizo .am labels file, containing the segmentation information. - 3D model: the 3D surface computed from the segmented labels data (.stl file). In the case of GMPKU2311 only the raw data and 3D model file are provided, as the surface was computed directly from an isosurface of the specimen in Avizo. The individual slices (.tif images) can be viewed with standard graphics software, and the datasets can be studied in 3D using tomographic reconstruction software such as Avizo (www.vsg3d.com/), Spiers (www.spiers-software.org/), VG Studio Max (www.volumegraphics.com) etc. The Avizo project and label files (.hx and .am files) require Avizo software (www.vsg3d.com/) to be opened. The 3D models (.stl files) are widely compatible with 3D freeware packages such as MeshLab (http://meshlab.sourceforge.net/) or Blender (https://www.blender.org/), or with proprietary software, e.g. Avizo (www.vsg3d.com/), Geomagic (http://www.geomagic.com/en/), Mimics (http://biomedical.materialise.com/mimics). The files relate to the following publication: Dong, X.; Vargas, K.; Cunningham, J. A.; Zhang, H.; Liu, T.; Chen, F.; Liu, J.; Bengtson, S. & Donoghue, P. C. J. 2015. Developmental biology of the early Cambrian cnidarian Olivooides. Journal of Paleontology.

Point of Contact:

Responsible Party:

Individual Name:

Dr John Cunningham

Organisation Name:

University of Bristol

Position Name:

Earth Sciences

Contact Info:

CI_Contact:

Address:

Delivery Point:

Wills Memorial Building

city:

Bristol

Postal Code:

BS8 1RJ

e-mail:

not available

role:

pointOfContact

Resource Maintenance:

MD_MaintenanceInformation:

maint. / update frequency:

notApplicable

Graphic overview:

Browse Graphic:

File Name:

https://resources.bgs.ac.uk/images/geonetworkThumbs/6423eedd-f493-5e36-e054-002128a47908.png

Descriptive Keywords:

Keywords:

keyword:

http://www.eionet.europa.eu/gemet/concept?cp=13&langcode=en&ns=5

keyword:

Geology

Thesaurus Name:

Citation:

Title:

GEMET - INSPIRE themes, version 1.0

Date:

CI_Date:

date:

2008-06-01

Date Type:

publication

Keywords:

keyword:

Cambrian

keyword:

Fossils

keyword:

NGDC Deposited Data

keyword:

Three dimensional models

Thesaurus Name:

Citation:

Title:

BGS Thesaurus of Geosciences

Date:

CI_Date:

date:

2022

Date Type:

revision

Keywords:

keyword:

NGDC Deposited Data

keyword:

https://webapps.bgs.ac.uk/services/ngdc/accessions/index.html

Type:

dataCentre

Keywords:

keyword:

NERC_DDC

Resource Constraints:

MD_LegalConstraints:

Access Constraints:

otherRestrictions

Other Constraints:

Access via University of Bristol and available under Non-Commercial Government License for public sector information.

Other Constraints:

http://inspire.ec.europa.eu/metadata-codelist/LimitationsOnPublicAccess/INSPIRE_Directive_Article13_1d

MD_LegalConstraints:

Use Constraints:

otherRestrictions

Other Constraints:

The copyright of materials derived from the British Geological Survey's work is vested in the Natural Environment Research Council [NERC]. No part of this work may be reproduced or transmitted in any form or by any means, or stored in a retrieval system of any nature, without the prior permission of the copyright holder, via the BGS Intellectual Property Rights Manager. Use by customers of information provided by the BGS, is at the customer's own risk. In view of the disparate sources of information at BGS's disposal, including such material donated to BGS, that BGS accepts in good faith as being accurate, the Natural Environment Research Council (NERC) gives no warranty, expressed or implied, as to the quality or accuracy of the information supplied, or to the information's suitability for any use. NERC/BGS accepts no liability whatever in respect of loss, damage, injury or other occurence however caused.

Other Constraints:

Either: (i) the dataset is made freely available, e.g. via the Internet, for a restricted category of use (e.g. educational use only); or (ii) the dataset has not been formally approved by BGS for access and use by external clients under licence, but its use may be permitted under alternative formal arrangements; or (iii) the dataset contains 3rd party data or information obtained by BGS under terms and conditions that must be consulted in order to determine the permitted usage of the dataset. Refer to the BGS staff member responsible for the creation of the dataset if further advice is required. He / she should be familiar with the composition of the dataset, particularly with regard to 3rd party IPR contained in it, and any resultant use restrictions. This staff member should revert to the IPR Section (ipr@bgs.ac.uk) for advice, should the position not be clear.

language:

eng

topicCategory:

geoscientificInformation

Extent:

Temporal Element:

TemporalExtent:

extent:

begin / end:

begin:

2012-09-01

end:

2017-02

Distribution

Distribution:

Transfer Options:

Digital Transfer Options:

onLine:

CI_OnlineResource:

linkage:

https://data.bris.ac.uk/data/dataset/ig22c0fcvoen1qrvpuoctgij9

function:

information

Digital Transfer Options:

onLine:

CI_OnlineResource:

linkage:

http://data.bris.ac.uk/datasets/tar/ig22c0fcvoen1qrvpuoctgij9.zip

function:

download

Digital Transfer Options:

onLine:

CI_OnlineResource:

linkage:

http://dx.doi.org/10.1111/pala.12231

function:

information

Data Quality

Data Quality:

Scope:

DQ_Scope:

level:

nonGeographicDataset

Level Description:

MD_ScopeDescription:

other:

non geographic dataset

Report:

Domain Consistency:

Result:

Conformance Result:

specification:

Citation:

Title:

INSPIRE Implementing rules laying down technical arrangements for the interoperability and harmonisation of Geology

Date:

CI_Date:

Date Type:

publication

date:

2011

explanation:

See the referenced specification

pass:

Domain Consistency:

Result:

Conformance Result:

specification:

Citation:

Title:

Commission Regulation (EU) No 1089/2010 of 23 November 2010 implementing Directive 2007/2/EC of the European Parliament and of the Council as regards interoperability of spatial data sets and services

Date:

CI_Date:

Date Type:

publication

date:

2010-12-08

explanation:

See http://eur-lex.europa.eu/LexUriServ/LexUriServ.do?uri=OJ:L:2010:323:0011:0102:EN:PDF

pass:

Lineage:

LI_Lineage:

statement:

For methodology see https://data.bris.ac.uk/datasets/ig22c0fcvoen1qrvpuoctgij9/readme.txt

Metadata

File Identifier:

6423eedd-f493-5e36-e054-002128a47908

language:

eng

Resource type:

nonGeographicDataset

Hierarchy Level Name:

non geographic dataset

Metadata Contact:

Responsible Party:

Organisation Name:

British Geological Survey

Contact Info:

CI_Contact:

phone:

CI_Telephone:

voice:

+44 115 936 3100

Address:

Delivery Point:

Environmental Science Centre,Keyworth

city:

NOTTINGHAM

administrative Area:

NOTTINGHAMSHIRE

Postal Code:

NG12 5GG

country:

United Kingdom

e-mail:

enquiries@bgs.ac.uk

role:

pointOfContact

Date Stamp:

2024-04-24

Metadata Standard Name:

http://vocab.nerc.ac.uk/collection/M25/current/GEMINI/

Metadata Standard Name:

UK GEMINI

Metadata Standard Version:

2.3

Dataset URI:

http://data.bgs.ac.uk/id/dataHolding/13607249