Identification

Data Identification:

citation:

Citation:

Title:

QICS Data: Gene expression data of scallops Pecten maximus and mussels Mytilus edulis held in the vicinity of a sub-seabed CO2 release (2012)

Date:

CI_Date:

Date Type:

creation

date:

2012

Identifier:

RS_Identifier:

code:

http://data.bgs.ac.uk/id/dataHolding/13606457

Abstract:

The QICS project (Quantifying and Monitoring Potential Ecosystem Impacts of Geological Carbons Storage) was established to improve our understanding of the potential impacts of CO2 release on the environment and to develop tools and best practice for monitoring sub-seabed CCS reservoirs. To monitor the potential impact of a CO2 leak to surficial benthic megafauna, cages of bivalves (the common mussel Mytilus edulis Linnaeus, 1758 and the king scallop Pecten maximus (Linnaeus, 1758)) were deployed at the gas release site and at a reference site in the QICS experiment - both within Ardmucknish Bay, Oban, Scotland. Replicate individuals were sampled at six time points over a 125-day period, which spanned both the 37-day injection and recovery phases of the experiment, in order to establish impacts to molecular physiology. Samples of bivalves were also simultaneously sampled from a reference site within the bay in order to contrast changes in physiology induced by the gas release with naturally variability in the physiological performance of both species. There was no evidence of gene regulation of either selected carbonic anhydrases (CAx genes) or the alpha subunit of sodium potassium ATPAses (ATP1A genes) in individual bivalves collected from the CO2 gas release site, in either species. In the common mussel Mytilus edulis there was only evidence for changes with time in the expression of genes coding for different classes of carbonic anhydrase. It was concluded that the effects of the plume of elevated pCO2 on ion-regulatory gene transcription were negligible in both species. Pratt et al. 2015. No evidence for impacts to the molecular ecophysiology of ion or CO2 regulation in tissues of selected surface-dwelling bivalves in the vicinity of a sub-seabed CO2 release. International Journal of Greenhouse Gas Control. DOI:10.1016/j.ijggc.2014.10.001. QICS project website: www.bgs.ac.uk/qics/home.html.

Point of Contact:

Responsible Party:

Individual Name:

Chris Hauton

Organisation Name:

National Oceanography Centre Southampton

Contact Info:

CI_Contact:

Address:

country:

United Kingdom

e-mail:

not available

role:

pointOfContact

Responsible Party:

Individual Name:

Chris Hauton

Organisation Name:

National Oceanography Centre Southampton

Contact Info:

CI_Contact:

Address:

country:

United Kingdom

e-mail:

not available

role:

principalInvestigator

Resource Maintenance:

MD_MaintenanceInformation:

maint. / update frequency:

notApplicable

Graphic overview:

Browse Graphic:

File Name:

https://resources.bgs.ac.uk/images/geonetworkThumbs/0a7d6fdf-4eac-6e23-e054-002128a47908.png

Descriptive Keywords:

Keywords:

keyword:

http://www.eionet.europa.eu/gemet/concept?cp=13&langcode=en&ns=5

keyword:

Geology

Thesaurus Name:

Citation:

Title:

GEMET - INSPIRE themes, version 1.0

Date:

CI_Date:

date:

2008-06-01

Date Type:

publication

Keywords:

keyword:

Monitoring

keyword:

Environmental impact

keyword:

Carbon

keyword:

UKCCS

keyword:

NGDC Deposited Data

keyword:

Storage

Thesaurus Name:

Citation:

Title:

BGS Thesaurus of Geosciences

Date:

CI_Date:

date:

2022

Date Type:

revision

Keywords:

keyword:

https://ukccs-research.org/

keyword:

UKCCS

keyword:

NGDC Deposited Data

keyword:

https://webapps.bgs.ac.uk/services/ngdc/accessions/index.html

Type:

dataCentre

Keywords:

keyword:

NERC_DDC

Resource Constraints:

MD_LegalConstraints:

Access Constraints:

otherRestrictions

Other Constraints:

intellectualPropertyRights

Other Constraints:

http://inspire.ec.europa.eu/metadata-codelist/LimitationsOnPublicAccess/INSPIRE_Directive_Article13_1e

Other Constraints:

Either : (i) the dataset has not been formally approved by BGS for access and use by external clients under license; and / or (ii) the dataset contains 3rd party data or information obtained by BGS under terms and conditions that must be consulted before the dataset can be provided to, or accessed by, BGS staff or external clients. Refer to the BGS staff member responsible for the creation of the dataset if further advice is required. He / she should be familiar with the composition of the dataset, particularly with regard to 3rd party IPR contained in it, and any resultant access restrictions. This staff member should revert to the IPR Section (IPR@bgs.ac.uk) for advice, should the position not be clear.

MD_LegalConstraints:

Use Constraints:

otherRestrictions

Other Constraints:

The copyright of materials derived from the British Geological Survey's work is vested in the Natural Environment Research Council [NERC]. No part of this work may be reproduced or transmitted in any form or by any means, or stored in a retrieval system of any nature, without the prior permission of the copyright holder, via the BGS Intellectual Property Rights Manager. Use by customers of information provided by the BGS, is at the customer's own risk. In view of the disparate sources of information at BGS's disposal, including such material donated to BGS, that BGS accepts in good faith as being accurate, the Natural Environment Research Council (NERC) gives no warranty, expressed or implied, as to the quality or accuracy of the information supplied, or to the information's suitability for any use. NERC/BGS accepts no liability whatever in respect of loss, damage, injury or other occurence however caused.

Other Constraints:

Either: (i) the dataset is made freely available, e.g. via the Internet, for a restricted category of use (e.g. educational use only); or (ii) the dataset has not been formally approved by BGS for access and use by external clients under licence, but its use may be permitted under alternative formal arrangements; or (iii) the dataset contains 3rd party data or information obtained by BGS under terms and conditions that must be consulted in order to determine the permitted usage of the dataset. Refer to the BGS staff member responsible for the creation of the dataset if further advice is required. He / she should be familiar with the composition of the dataset, particularly with regard to 3rd party IPR contained in it, and any resultant use restrictions. This staff member should revert to the IPR Section (ipr@bgs.ac.uk) for advice, should the position not be clear.

language:

eng

topicCategory:

geoscientificInformation

Extent:

Geographic Element:

Geographic Bounding Box:

westBoundLongitude:

-5.4200

eastBoundLongitude:

-5.4200

southBoundLatitude:

56.4900

northBoundLatitude:

56.4900

Geographic Description:

Geographic Identifier:

RS_Identifier:

authority:

Citation:

Title:

British Geological Survey Gazetteer: OS gazetteer

Date:

CI_Date:

Date Type:

revision

date:

2002

code:

Ardmucknish Bay [id=1214829]

Temporal Element:

TemporalExtent:

extent:

begin / end:

begin:

2012-05-08

end:

2012-09-09

Supplemental Information:

Pratt et al. 2015. No evidence for impacts to the molecular ecophysiology of ion or CO2 regulation in tissues of selected surface-dwelling bivalves in the vicinity of a sub-seabed CO2 release. International Journal of Greenhouse Gas Control. DOI:10.1016/j.ijggc.2014.10.001. QICS project website: www.bgs.ac.uk/qics/home.html.

Distribution

Distribution:

Distribution Format:

Format:

Format Name:

.xls

Transfer Options:

Digital Transfer Options:

onLine:

CI_OnlineResource:

linkage:

http://www.bgs.ac.uk/ukccs/accessions/index.html#item8561

function:

download

Data Quality

Data Quality:

Scope:

DQ_Scope:

level:

dataset

Level Description:

MD_ScopeDescription:

other:

dataset

Report:

Domain Consistency:

Result:

Conformance Result:

specification:

Citation:

Title:

INSPIRE Implementing rules laying down technical arrangements for the interoperability and harmonisation of Geology

Date:

CI_Date:

Date Type:

publication

date:

2011

explanation:

See the referenced specification

pass:

Domain Consistency:

Result:

Conformance Result:

specification:

Citation:

Title:

Commission Regulation (EU) No 1089/2010 of 23 November 2010 implementing Directive 2007/2/EC of the European Parliament and of the Council as regards interoperability of spatial data sets and services

Date:

CI_Date:

Date Type:

publication

date:

2010-12-08

explanation:

See http://eur-lex.europa.eu/LexUriServ/LexUriServ.do?uri=OJ:L:2010:323:0011:0102:EN:PDF

pass:

Lineage:

LI_Lineage:

statement:

Peer-reviewed paper to be published in the International Journal of Greenhouse Gas Control (in press). Will include original gene expression values and details of processing (citation to follow). Organism sampling, including tissue dissections conducted by Chris Hauton and Elizabeth Morgan; Ocean and Earth Science, University of Southampton Molecular methods conducted by Nicola Pratt; Ocean and Earth Science, University of Southampton This spreadsheet compiled by Hauton and Pratt, Ocean and Earth Science, University of Southampton. RNA extraction using TRIreagent (SigmaAldrich, Dorset, UK) according to manufacturer's instructions (Product No. T9424) RNA pellets air dried and diluted in DEPC-treated water (DEPC = diethyl pyrocarbonate) RNA purity assessed by measuring absorbance at 230nm, 260nm and 280nm using a NanoDrop spectrophotometer RNA quantity assessed using Bio-Rad (Herts, UK) Experion electrophoresis system according to manufacturer's instructions (Product No. 700-7104) RNA integrity (RQI) assessed using Bio-Rad Experion electrophoresis system according to manufacturer's instructions RNA DNase-treated using Promega (Hants, UK) RQ1 RNase-Free DNase, according to manufacturer's instructions (Product No. M6101) cDNA produced using LifeTechnologies (Strathclyde, UK) Superscript III Reverse Transcriptase according to manufacturer's instructions with oligo-dT priming (Product No. 18080044) qPCR carried out using a Qiagen (West Sussex) Rotorgene 3000 instrument qPCR Mastermix - Precision SY Mastermix with SYBR green (PrimerDesign, Hants, UK) (Product No. Precision-SY). qPCR conditions: 95 degrees for 10 minutes; 40 cycles of 95 degrees for 10 seconds, 60 degrees for 60 seconds qPCR amplicon specificity verified by melt curve analysis qPCR run files available upon request to Chris Hauton (ch10@noc.soton.ac.uk) Acknowledgements: field sampling and molecular lab work funded under the UK NERC QICS Project (NE/H013881/1)

Metadata

File Identifier:

0a7d6fdf-4eac-6e23-e054-002128a47908

language:

eng

Resource type:

dataset

Metadata Contact:

Responsible Party:

Organisation Name:

British Geological Survey

Contact Info:

CI_Contact:

phone:

CI_Telephone:

voice:

+44 131 667 1000

Address:

Delivery Point:

The Lyell Centre, Research Avenue South

city:

EDINBURGH

administrative Area:

LOTHIAN

Postal Code:

EH14 4AP

country:

United Kingdom

e-mail:

enquiries@bgs.ac.uk

role:

pointOfContact

Date Stamp:

2024-04-24

Metadata Standard Name:

http://vocab.nerc.ac.uk/collection/M25/current/GEMINI/

Metadata Standard Name:

UK GEMINI

Metadata Standard Version:

2.3

Dataset URI:

http://data.bgs.ac.uk/id/dataHolding/13606457